After lurking here for a week or two I finally decided to create an account. I'm Dan, and I've been on some other forums (UG, Jemsite, etc; RG_FANMAN was my username there), and I've been the owner of a CIJ Fender Jaguar '66 Reissue for nearly two months. It's my first short scale guitar, and I love it to death. Hopefully more short scales will follow.

However, I'm finding the stock pickups to be a little lackluster; the low end is muddy and undefined, and my high end completely lacks sustain. Right now my amp is a Mesa Boogie DC-5 head into a Marshall JCM 800 4x12, but if all goes well I'll have an Ampeg VT-22 combo at my disposal in a couple of weeks. I've also got a Big Muff that I like using in addition to a Boss DS-1, and I plan on getting a ProCo Rat if I come into possession of the aforementioned Ampeg. I play a lot of alternative rock and indie, and really want more definition from my Jaguar.
I'm really in love with the Jaguar tones in these youtube vids:
I've done a bit of research into it, and it seems a lot of people like Jason Lollar and Curtis Novak Jaguar pickups, and Seymour Duncans are also regarded well. However, I'm really green when it comes to pickup, so I don't know what's the best option for me. Can anyone help me decide on a set of Jaguar pickups that'll fit my needs? Price isn't too much of a concern since the Jaguar is my main guitar, but I really don't want to spend over 300 bucks on pickups.
Thanks for reading!
- Dan